Browse of TCMCG015C02688 protein

CDS

Accession Number	TCMCG015C02688
gbkey	CDS
Protein Id	XP_027072714.1
Location	complement(join(605422..606032,608146..608508,611003..612107,612947..613242,613398..613476,613651..613738,614367..614499,614616..614814,619391..620454,620539..620758,621525..621773,623429..623672,623782..623841,624173..624490,624624..624702,625315..625394,625493..625570,626281..626364,626543..626630,627010..627096,627211..627350,627438..627511,628736..628759))
Gene	LOC113697305
GeneID	113697305
Organism	Coffea arabica

Protein

Length	1920aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA506972
db_source	XM_027216913.1
Definition	mediator of RNA polymerase II transcription subunit 13-like isoform X5 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACAAATGTATTTAAGATTGGAGGTTTACATCAGATATCGTGGTTTCAGTTTCTGCCAAATGAATTTGATCCTAGCTCCTTGTCTGACAAAAGTGTGAAGGTCGACGCCAGAGATGCTGCAACATCTGTGGTGCTGTCATCACACCTACAGTTGCAGAAGGAGGGATTTCTTAGTACATGGACCAATTCTTTTGTTGGACCATGGGATCCGTCCCAGGGTTTGCACAATCCTGATGAGAAGATCAAGCTGTGGCTTTTCCTCCCCGGGAATCATTCATCTGTTGTTGAGAAGGCTCAACCTACTGTATCCAAATTGAGAGTGCTTGCATCAGGACTTTGGGTGGCTCCTGGGGACTCAGAAGAGGTTGCAGCTGCATTGTCTCAAGCCTTAAGGAACTGTGTAGAAAGGGCACTTAAAGGATTTTCCTTCATGAGATTTGGGGATGTATTCTCGAGATATCATCCATCTTCACAGAGTGAAGAACTTTACAGGAAAGGTCAGCCAGTGGTTGAATTCATCTTTGCTGCCACAGAGGAAGCAATTTTTGTGCATGCTGTAATATGTGCAAAACATATACGGGCACTTTCAAGTGGTGATATTGAAATGACATTGAAGCATTCCACTGATCATTTTAGCAATAGGCTTCCAGTTGTGGTCTCCCCTCATGGAATGCTTGGGAGGCTCACTGGGTGTTGTCCAAGTGATCTTGTGAAGCAAGTCTATTTCAGTTCTGTCAAGCTTAAAGCATCAAATGAAGTTGTAGGTCTTCCATATCATGCTTTGCATGGCTCTGGTTGTCATCTGAGAGGTCAAAATTGCTATGCTGAAATTACCCTTGGTGGTCCTATTGGTGGAAATGACAAGATACTGGCACAAAATTCAGGCTTGCATAAGAATTTGTCTAGGCATAATTTGACAGAATCCATGCCAGAGATGAAGGTCAATCAAAAAGGGCCACCAGAGCCTTCAAGAGTATTTATATATCCTGCTGAAGCTGTACTTGTTCCGGTGATGCAAACATCATTAGCGAGGTCTTGTCTTAAGAGATTCTGGCTACAAAACTGGATAGGGCCATCATTGTTTGCCTCATCCTTCTTTATGCACAGTAGTGATTGTAAAGCCGATTCAAAAGATGGTTCTCGGCTGGAGTCAAACAGCCTTCGCTCTCAGCATGGTTACCACAGTAGCAGCAGCAGTAACAATAGCAGTATCAGCAGTATTAGTAGTTCATCCAGTGATAGTGATTACCGAACTTCTGGAGCTGGCGATCTTGAGGCTGATGCTGATTCTTTGACATGTAGACAGTCTGGTTTATCTTCCATTGACCAGTCACATGACATTCTCAAGCTGGGCTCTAAGCGAGTGCATTCTGGGATGTCTGAGTCATTTAATCAAGCAGGTGCAGTTATAAACCCATCTACAAGTGATTATGGCTCAATAGAAGTTAATAACTCGGCCATTATTGGAGGTTCAAATCATCCTGTTGGATGGGGTTGGGATGATGATGACAGAGGTATGGGCATGGATATTCAAGCACTTCTGTCAGAGTTTGGAGATTTTGGTGACTTATTTGAGGATGATGTCTTGCCTTTTGGGGAGCCTCCGGGAACTGCAGAGTCACAAGCTGTTGTAATTTCAGCACAAGATTGTGGAGATTTTGGCAGTAGCCCTAGTACATCAATGATGGATGTCTCAGACCAGATGCTTTTGCCAGTAGGTTTTCCCTCATTTGAAAGTTTTCACTCACCACCAGCTCCCGTTGCCATGGATGATTCTCTGACCCAAAATCAGGATCTAACAAAGACTGTCAGTGTTCCGGAATATGGAGCAGTTGAAACCCCTGCTGTTGAGGTCACTTCATCAATCTTCAGAAGCCCATACCTTCCCAAATCACGGAAAACAGAGACTGAGAATTCATGCTCAAACAAATATGTATACTCAGCAACACCTCCTTCTCCTTGTGTTGATGACTCTGATGAGAAGTCTGGTATCACTGTAAACATGAAAATATGTTCTGGGAGACAAGACAAGATTGCGGTTCCCCAATCAAAGAAATATTACACTCATATTGATGGTGGAATTCACAAATCTAATGGCATGTCATCAACTTGTGATGATGGCACAGCAGCGCATGAACCTGTAACAATGTCATCCTCTTTGGGGCTCAATTCCCTAAATGCTGTTAAATCCGTCTCAAGCAAAGGAAGTGATGGTTCATTAAGAGTGGAGAGTTTTGTTCCATCTTTGAAGCCTATGCTTGCAACAGAATTAGAATGTCTCATGTGTCAGGCTTTTATGTGCAGGATAAGACATACACTATTATCTTCTAGGTGTCACTTGCCAGTCGGCTTGAATAGGCTGTCTGCGGTTAATATTCTGAATCAGCCACATGTTGATTCAAGCATACTGTCAGACAATCTTTCAAGTAAATCTGAGGTGAAGAAGAAAGAGACTATACCAGTAAGAATTGCTGGTGACATGGATGCAGTATTGCTAGATGGGAATCTTAGTGCACCTGTTGGTGTTTGGCGCCCTGTTACTAAAGGTGCAAAATCTACCACCCATCCTATGGAGCTCTGCCCATCTATTCCTCAAAATTCATTTGTTGAGGAAAACCTTCTATCTTATGGACTGAGGCAACCACTTCAAGAACTTCTTGATGGCTTGGCCTTACTAGTTCAACAAGCTACTTCATTTGTTGATGTGGCACTTGATTCTGATTGTGGAGATGGTGTTCATGGTTGGCTTGCCTTGCAAGAGCAGTTGAGGCGCGGATTTTCTTGTGGACCGTCTATGGTTCATGCAGGTTGTGGGGGAGTTTTATCTTCGTGCCATTCAGTGGATATTGCGGGAGTGGAGCTAGTCGATCCACTTTCAGTTGATGTTCAGCCATCTTTTACGATTAGTCTGCTGCAATCAGACATAAAAGCGGCTCTCAAAACTGCTTTTGGCACTTTGGACGGTCCACTATTTGTATCTGACTGGTGCAAAGGTCGCAGTCTGTCCTGTGAAGCCGGATCAATGTGTGATGAATTCTATGCCGAATCAACAGCTAGTGCCAGTGAATGTCAAGATTCTTCAAATGGGGCTAGAGCAGAGGAGGCAAGCGATAGGAAATCACTCCAAGAAGCTTGTTTATCAGAGTCAGAGCAGCAAGCAGGCTCAAAGCTCAGGCCAACATTGGCTGTAGTTCCATTTCCTGCTATACTTGTTGGGTACCAAGACGATTGGCTTAAGACATCTGCCAGCTCTCTGCAACTCTGGGAAAAGGCGCCGCTTGAACCATATGCTACACAGAAACATATGACATACCATGTTGTATGTCCAGATATTGAACCCCTCACCACAGCAGCTGCTGATTTCTTTCAACAACTTGGAACTGTGTATGAAACCTGCAATTTGGGAACTCATTCACCTCAAAATTTCGGAAGTGAAATGGATCTAGATTCTGGGAAGTCTTCATGTTCTGGTTTTGTTCTACTTGATTGTCCTCAATCAATGAAGATTGATAGCAGTAGTGCATCTATTCTGGGTTCGATCAGTGACTATTTCCTCTCCCTGTCAAATGGTTGGGATTTGGCGAGCTATTTGAAGTCTCTTTCAAAAGTTCTTAAAACTTTAAATCTCAGTTCATGCATGACCACAAGCACAAAAGAAGGGAATAGTGGTCCATACACACAGGTAGTCTATGTAGTCTGTCCCTTCCCAGAGCCTCTTGCAATTCTACGGACTGTAGTTGAATCTTCAATTGCAGTTGGCGCTTCTGTTCTTTCTTCAGATAAGGAGAAAAGATCGATGATGCACAATCAAGTTGGAAAGGCCTTAAATCATTCAGCAGCTGTGGACGAAACACTATCCAATGTCTTGACTATTTCAGGATTTAGTATTCCTAAATTGGTGTTGCAGATTGTAACAGTGGATGCCATTTTTAGGGTAACAAATCCTCCTCTTAATGAGCTTGTTGTTCTGAAGGAAATTGCTTTTACAGTTTACAATAAGGCCCGAAGGGTTTTACGAGGAAGCAATTGTGATGTGGTTCCATCTAGTACATCCTTGTCTGGTAGATCTCATTCAGTCTTAATGCAAATGGCTTCACCATTAACTGGGATGTGGAAAGATTGTGTTGGTCCTCGACTAGCAGCATCTTCCCTCCAGAGAGAAAGTGATCTTGATGCTAGCTTGAGGTCCAGTACTTGGGAAAATTCCTGGCAAACGAGGTCTGGGGCACTCGGATGTGATCCAAGTAGAGGTGGCGATTTTCTTATTCAAGATGAGAGCCGTTGCATGTTTGAGCCACTTTTTATTCTTGCTGACCCGGGATCTTTAGAACGTGGAGTGACTCCTCCTGTTTTTGGGAATCCAGCTTCAGAATCTTCAAAGGTTTTGGCAGATGATGGTACAAGTGGAAGCTTAATGCAAAGTTCTGCTTCTTCGGGAAGTGGAGATACTGGACCAAGCTCTCAGCACGATTCATCAGAGTCAGATGGATTTGGATCTGGCAACCAAAAGACACTCCCGAGCTTGCATTGCTGCTATGGCTGGACTGAAGATTGGCGTTGGTTGGTGTGTATATGGACAGACTCTAGGGGGGAATTGCTTGACAGCTACATATATCCCTTTGGAGGAATCAGTAGCAGGCAGGATACAAAGGGTCTGCAGTCTCTTTTTATCCAAATTCTGCAACAAGGTTGTCAAATACTTCAGTCTTGTTCTGCAGATGCTGGCAAACCAAGAGATTTTGTTATTGCACGTATTGGATGCTTCTTTGAGCTTGAATGCCAAGAGTGGCAGAAAGCTCTATATGCAATTGGTGGTTCAGAGGTGAAGAAGTGGTCTCTGCAGCTTAGACGTTCTGTTCCTGACGGGATGCCTACTAATAGTAATGGAACTTCAATGCAGCAACAAGAAATGACTTTATTACAAGAGAGAACACTTCCATCTTCGCCTAGTCCTCTGTACAGTCCTCACTCAAAGTCTTCAACATTCATGAAAAGTGGTTTGGGACAACCTTCAAACAGAAAGCAACTGATGGGAGGAGTGGATAGCTCGAGAGGTTTGCTTCAGTGGGTGCAAAGTATCAGTTTTATCTCACTATCAGTTGACCATTCTCTACAGCTGGTCTTCCAGGCAGATTCATTAGCTTCTGGGTCAACTCAGAGCAATGGTTTTCTAAACCAGCCAAGTTATCTTGAAGGATATACTCCCGTGAGATCCCTTGGTTTGACATCTGCTTCCTATGTTCTAATTCCGTCACCCAGCATACGTTTTCTCCCTCCTGCACCTCTTCAGCTCCCTACATGCCTTACCGCTGAGTCCCCACCCCTAGCTCACCTTCTACACAGTAAAGGCTCTGCTATTCCCCTTTGTACTGGTTTTGTGGTTTCAAAAGCTGTTCCGTCAATGAGGAAAGATTCTAGGAGCATCTCGAAAGAAGAATGGCCTTCTATACTTTCCGTGAGTCTTGTTGATTATTATGGAGGTAATAACATGGCCCAAGATAAAATTGTGAAGGGCATGGGGAAATTGGGAGGAAGGGGCTTAAGTTCAGAAGCTAGGGAATTTGAATTAGAGACTCATCTAGTTCTCGAGTCTGTGGCAGCAGAACTTCATGCTTTATCATGGATGACCGTAAGTCCTGCATACTTGGAAAGGAGATCTGCATTGCCATTTCACTGCGACATGGTTCTGAGACTTAGAAGGCTTCTTCACTTTGCTGATAAGGAGTTATCTCGACAGCCAGAGGAGTCACCGTCATAG

Protein:   MWTNVFKIGGLHQISWFQFLPNEFDPSSLSDKSVKVDARDAATSVVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGNHSSVVEKAQPTVSKLRVLASGLWVAPGDSEEVAAALSQALRNCVERALKGFSFMRFGDVFSRYHPSSQSEELYRKGQPVVEFIFAATEEAIFVHAVICAKHIRALSSGDIEMTLKHSTDHFSNRLPVVVSPHGMLGRLTGCCPSDLVKQVYFSSVKLKASNEVVGLPYHALHGSGCHLRGQNCYAEITLGGPIGGNDKILAQNSGLHKNLSRHNLTESMPEMKVNQKGPPEPSRVFIYPAEAVLVPVMQTSLARSCLKRFWLQNWIGPSLFASSFFMHSSDCKADSKDGSRLESNSLRSQHGYHSSSSSNNSSISSISSSSSDSDYRTSGAGDLEADADSLTCRQSGLSSIDQSHDILKLGSKRVHSGMSESFNQAGAVINPSTSDYGSIEVNNSAIIGGSNHPVGWGWDDDDRGMGMDIQALLSEFGDFGDLFEDDVLPFGEPPGTAESQAVVISAQDCGDFGSSPSTSMMDVSDQMLLPVGFPSFESFHSPPAPVAMDDSLTQNQDLTKTVSVPEYGAVETPAVEVTSSIFRSPYLPKSRKTETENSCSNKYVYSATPPSPCVDDSDEKSGITVNMKICSGRQDKIAVPQSKKYYTHIDGGIHKSNGMSSTCDDGTAAHEPVTMSSSLGLNSLNAVKSVSSKGSDGSLRVESFVPSLKPMLATELECLMCQAFMCRIRHTLLSSRCHLPVGLNRLSAVNILNQPHVDSSILSDNLSSKSEVKKKETIPVRIAGDMDAVLLDGNLSAPVGVWRPVTKGAKSTTHPMELCPSIPQNSFVEENLLSYGLRQPLQELLDGLALLVQQATSFVDVALDSDCGDGVHGWLALQEQLRRGFSCGPSMVHAGCGGVLSSCHSVDIAGVELVDPLSVDVQPSFTISLLQSDIKAALKTAFGTLDGPLFVSDWCKGRSLSCEAGSMCDEFYAESTASASECQDSSNGARAEEASDRKSLQEACLSESEQQAGSKLRPTLAVVPFPAILVGYQDDWLKTSASSLQLWEKAPLEPYATQKHMTYHVVCPDIEPLTTAAADFFQQLGTVYETCNLGTHSPQNFGSEMDLDSGKSSCSGFVLLDCPQSMKIDSSSASILGSISDYFLSLSNGWDLASYLKSLSKVLKTLNLSSCMTTSTKEGNSGPYTQVVYVVCPFPEPLAILRTVVESSIAVGASVLSSDKEKRSMMHNQVGKALNHSAAVDETLSNVLTISGFSIPKLVLQIVTVDAIFRVTNPPLNELVVLKEIAFTVYNKARRVLRGSNCDVVPSSTSLSGRSHSVLMQMASPLTGMWKDCVGPRLAASSLQRESDLDASLRSSTWENSWQTRSGALGCDPSRGGDFLIQDESRCMFEPLFILADPGSLERGVTPPVFGNPASESSKVLADDGTSGSLMQSSASSGSGDTGPSSQHDSSESDGFGSGNQKTLPSLHCCYGWTEDWRWLVCIWTDSRGELLDSYIYPFGGISSRQDTKGLQSLFIQILQQGCQILQSCSADAGKPRDFVIARIGCFFELECQEWQKALYAIGGSEVKKWSLQLRRSVPDGMPTNSNGTSMQQQEMTLLQERTLPSSPSPLYSPHSKSSTFMKSGLGQPSNRKQLMGGVDSSRGLLQWVQSISFISLSVDHSLQLVFQADSLASGSTQSNGFLNQPSYLEGYTPVRSLGLTSASYVLIPSPSIRFLPPAPLQLPTCLTAESPPLAHLLHSKGSAIPLCTGFVVSKAVPSMRKDSRSISKEEWPSILSVSLVDYYGGNNMAQDKIVKGMGKLGGRGLSSEAREFELETHLVLESVAAELHALSWMTVSPAYLERRSALPFHCDMVLRLRRLLHFADKELSRQPEESPS